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Overview
Installation
Xml Input File
Data View
Include/Exclude Chars
Genetic Codes
Saving Data
Export Data
Tree View
Assign Branch Lengths
Rooting Trees
Print Trees
Export Trees
Output Files
Substitution Models
Morphology Priors
Analysis (Mapping)
Mapping Statistics
Analysis (Correlation)
Correlation Statistics
Analysis (Selection)
Selection Statistics
Analysis (ASR)

Installation

SIMMAP 1.5 is distributed as a zip archive. To install the software simply double-click the archive and move the uncompressed folder to the Applications/ or a location of your choosing.

The distribution has the following contents:

  1. A build identifier file - this identifies the distribution build (Build ddmmyyyy.rtf)
  2. The SIMMAP Software license (License.rtf)
  3. A folder containing the Nex2Xml file converter (Nex2Xml Folder/)
  4. A folder containing an R script to analyze the outputs of the MCMC prior analysis (Priors/)
  5. A read me file (ReadMe.rtf)
  6. A folder containing sample files (Sample Files/)
  7. SIMMAP 1.5.app


Before using SIMMAP 1.5 please read the software License here.