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Overview
Installation
Xml Input File
Data View
Include/Exclude Chars
Genetic Codes
Saving Data
Export Data
Tree View
Assign Branch Lengths
Rooting Trees
Print Trees
Export Trees
Output Files
Substitution Models
Morphology Priors
Analysis (Mapping)
Mapping Statistics
Analysis (Correlation)
Correlation Statistics
Analysis (Selection)
Selection Statistics
Analysis (ASR)

Saving Data

All changes made to the data can be saved. The original input file can be overwritten, saved as new file, or exported in a new format to a new file.

Save changes:

You can select to save changes by selecting from the main menu Data->Save (Cmd-S). All of the modifications you have made to the data will over-write the original file. These include changes to the taxon (sequence) name, character states, and excluded characters.

Save As... changes:

You can select to save changes by selecting from the main menu Data->Save As... (Cmd-Shift-S). All of the modifications you have made to the data will be saved to the new file. These include changes to the taxon (sequence) name, character states, and excluded characters.

Export...:

You can select to export the data in a new format from the main menu Data->Export.... Information for this option can be found here. Trees can also be exported. For more information see here.